Serveur d'exploration MERS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Current tools for the identification of miRNA genes and their targets

Identifieur interne : 000172 ( France/Analysis ); précédent : 000171; suivant : 000173

Current tools for the identification of miRNA genes and their targets

Auteurs : N. D. Mendes [France, Portugal] ; A. T. Freitas [France] ; M.-F. Sagot [France]

Source :

RBID : ISTEX:98638AF5D9974F9BC77F3279DE142725EDE6B340

Abstract

The discovery of microRNAs (miRNAs), almost 10 years ago, changed dramatically our perspective on eukaryotic gene expression regulation. However, the broad and important functions of these regulators are only now becoming apparent. The expansion of our catalogue of miRNA genes and the identification of the genes they regulate owe much to the development of sophisticated computational tools that have helped either to focus or interpret experimental assays. In this article, we review the methods for miRNA gene finding and target identification that have been proposed in the last few years. We identify some problems that current approaches have not yet been able to overcome and we offer some perspectives on the next generation of computational methods.

Url:
DOI: 10.1093/nar/gkp145


Affiliations:


Links toward previous steps (curation, corpus...)


Links to Exploration step

ISTEX:98638AF5D9974F9BC77F3279DE142725EDE6B340

Le document en format XML

<record>
<TEI wicri:istexFullTextTei="biblStruct">
<teiHeader>
<fileDesc>
<titleStmt>
<title>Current tools for the identification of miRNA genes and their targets</title>
<author>
<name sortKey="Mendes, N D" sort="Mendes, N D" uniqKey="Mendes N" first="N. D." last="Mendes">N. D. Mendes</name>
</author>
<author>
<name sortKey="Freitas, A T" sort="Freitas, A T" uniqKey="Freitas A" first="A. T." last="Freitas">A. T. Freitas</name>
</author>
<author>
<name sortKey="Sagot, M F" sort="Sagot, M F" uniqKey="Sagot M" first="M.-F." last="Sagot">M.-F. Sagot</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:98638AF5D9974F9BC77F3279DE142725EDE6B340</idno>
<date when="2009" year="2009">2009</date>
<idno type="doi">10.1093/nar/gkp145</idno>
<idno type="url">https://api.istex.fr/ark:/67375/HXZ-RLQ12DJ4-Z/fulltext.pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000733</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000733</idno>
<idno type="wicri:Area/Istex/Curation">000733</idno>
<idno type="wicri:Area/Istex/Checkpoint">000637</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000637</idno>
<idno type="wicri:doubleKey">0305-1048:2009:Mendes N:current:tools:for</idno>
<idno type="wicri:Area/Main/Merge">002866</idno>
<idno type="wicri:Area/Main/Curation">002840</idno>
<idno type="wicri:Area/Main/Exploration">002840</idno>
<idno type="wicri:Area/France/Extraction">000172</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title level="a" type="main">Current tools for the identification of miRNA genes and their targets</title>
<author>
<name sortKey="Mendes, N D" sort="Mendes, N D" uniqKey="Mendes N" first="N. D." last="Mendes">N. D. Mendes</name>
<affiliation wicri:level="3">
<country xml:lang="fr">France</country>
<wicri:regionArea>Équipe BAOBAB, Laboratoire de Biométrie et Biologie Évolutive (UMR 5558), CNRS, Univ. Lyon 1, 43 bd du 11 nov 1918, 69622, Villeurbanne Cedex, France, INESC-ID/IST, 9 Rua Alves Redol, 1000-029 Lisbon, Portugal and BAMBOO Team, INRIA Rhone-Alpes, 655 avenue de l'E;urope, 38330 Montbonnot Saint-Martin</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Rhône-Alpes</region>
<settlement type="city">Montbonnot Saint-Martin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<country wicri:rule="url">Portugal</country>
</affiliation>
<affiliation wicri:level="1">
<country wicri:rule="url">Portugal</country>
</affiliation>
</author>
<author>
<name sortKey="Freitas, A T" sort="Freitas, A T" uniqKey="Freitas A" first="A. T." last="Freitas">A. T. Freitas</name>
<affiliation wicri:level="3">
<country xml:lang="fr">France</country>
<wicri:regionArea>Équipe BAOBAB, Laboratoire de Biométrie et Biologie Évolutive (UMR 5558), CNRS, Univ. Lyon 1, 43 bd du 11 nov 1918, 69622, Villeurbanne Cedex, France, INESC-ID/IST, 9 Rua Alves Redol, 1000-029 Lisbon, Portugal and BAMBOO Team, INRIA Rhone-Alpes, 655 avenue de l'E;urope, 38330 Montbonnot Saint-Martin</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Rhône-Alpes</region>
<settlement type="city">Montbonnot Saint-Martin</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Sagot, M F" sort="Sagot, M F" uniqKey="Sagot M" first="M.-F." last="Sagot">M.-F. Sagot</name>
<affiliation wicri:level="3">
<country xml:lang="fr">France</country>
<wicri:regionArea>Équipe BAOBAB, Laboratoire de Biométrie et Biologie Évolutive (UMR 5558), CNRS, Univ. Lyon 1, 43 bd du 11 nov 1918, 69622, Villeurbanne Cedex, France, INESC-ID/IST, 9 Rua Alves Redol, 1000-029 Lisbon, Portugal and BAMBOO Team, INRIA Rhone-Alpes, 655 avenue de l'E;urope, 38330 Montbonnot Saint-Martin</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Rhône-Alpes</region>
<settlement type="city">Montbonnot Saint-Martin</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series>
<title level="j" type="main">Nucleic Acids Research</title>
<idno type="ISSN">0305-1048</idno>
<idno type="eISSN">1362-4962</idno>
<imprint>
<publisher>Oxford University Press</publisher>
<date type="published">2009</date>
<date type="e-published">2009</date>
<biblScope unit="vol">37</biblScope>
<biblScope unit="issue">8</biblScope>
<biblScope unit="page" from="2419">2419</biblScope>
<biblScope unit="page" to="2433">2433</biblScope>
</imprint>
<idno type="ISSN">0305-1048</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt>
<idno type="ISSN">0305-1048</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract">The discovery of microRNAs (miRNAs), almost 10 years ago, changed dramatically our perspective on eukaryotic gene expression regulation. However, the broad and important functions of these regulators are only now becoming apparent. The expansion of our catalogue of miRNA genes and the identification of the genes they regulate owe much to the development of sophisticated computational tools that have helped either to focus or interpret experimental assays. In this article, we review the methods for miRNA gene finding and target identification that have been proposed in the last few years. We identify some problems that current approaches have not yet been able to overcome and we offer some perspectives on the next generation of computational methods.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>France</li>
<li>Portugal</li>
</country>
<region>
<li>Auvergne-Rhône-Alpes</li>
<li>Rhône-Alpes</li>
</region>
<settlement>
<li>Montbonnot Saint-Martin</li>
</settlement>
</list>
<tree>
<country name="France">
<region name="Auvergne-Rhône-Alpes">
<name sortKey="Mendes, N D" sort="Mendes, N D" uniqKey="Mendes N" first="N. D." last="Mendes">N. D. Mendes</name>
</region>
<name sortKey="Freitas, A T" sort="Freitas, A T" uniqKey="Freitas A" first="A. T." last="Freitas">A. T. Freitas</name>
<name sortKey="Sagot, M F" sort="Sagot, M F" uniqKey="Sagot M" first="M.-F." last="Sagot">M.-F. Sagot</name>
</country>
<country name="Portugal">
<noRegion>
<name sortKey="Mendes, N D" sort="Mendes, N D" uniqKey="Mendes N" first="N. D." last="Mendes">N. D. Mendes</name>
</noRegion>
<name sortKey="Mendes, N D" sort="Mendes, N D" uniqKey="Mendes N" first="N. D." last="Mendes">N. D. Mendes</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/France/Analysis
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000172 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/France/Analysis/biblio.hfd -nk 000172 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    MersV1
   |flux=    France
   |étape=   Analysis
   |type=    RBID
   |clé=     ISTEX:98638AF5D9974F9BC77F3279DE142725EDE6B340
   |texte=   Current tools for the identification of miRNA genes and their targets
}}

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Mon Apr 20 23:26:43 2020. Site generation: Sat Mar 27 09:06:09 2021